EGAF00004998700 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004998700
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	50374927
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC	163463	0.3244927779250181	TruSeq Adapter, Index 2 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGATGTA	19085	40.40913	34
GATCGGA	19670	40.361885	1
ACCGATG	19305	40.06257	32
CCGATGT	19205	39.99629	33
TCTCGTA	19105	39.837315	41
CTCGTAT	19015	39.829212	42
CACCGAT	19325	39.816223	31
CGTATGC	19015	39.568558	44
TATCTCG	19720	39.119194	39
ATCGGAA	20545	38.751354	2
GTCACCG	19885	38.728104	29
TCGTATG	19685	38.47347	43
ACACGTC	20755	38.221333	13
CGTCTGA	20960	37.82276	16
ATCTCGT	20385	37.54091	40
TCGGAAG	21260	37.467457	3
TCACCGA	20600	37.34119	30
CGGAAGA	21970	36.34677	4
ACGTCTG	22470	35.4181	15
CACGTCT	23245	34.23724	14