FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004998970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004998970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30621910
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGACG38550.028.2325616
TCGACGA41550.026.5187877
GTTCGAC41450.026.2573035
CGACGAG43000.024.8400848
CGGTATA59750.023.83635520
AGTTCGA55150.020.0200564
ACGAGGA68900.019.12521210
GACGAGG70900.018.0147939
CAGTTCG63450.017.8619523
CGAGGAT71350.017.74362411
AACGCTA100350.017.43166423
ACGCTAC100800.017.40850824
ATGACGG79050.017.38078516
GTATAGA90550.016.9507622
ATAGAGT93200.016.67422924
TATAGAG94700.016.61737423
CGCTACC105850.016.59927225
AACGACG35500.016.15257816
GTCCGTT21450.016.044891
GGTATAG91250.015.93160421
Produced by FastQC (version 0.11.5)