FastQCFastQC Report
Mon 27 Mar 2023
EGAF00004999299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004999299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89499591
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG1358500.15178840314476968No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAAC1180720.1319246252197957No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG1030730.11516588941730471No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)