FastQCFastQC Report
Fri 1 Jul 2022
EGAF00004999316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004999316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82602344
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT1094490.13250108253586604No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG973860.11789738073292447No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA857890.10385782756963893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)