FastQCFastQC Report
Thu 16 Jun 2022
EGAF00004999538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004999538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences137939914
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA2301600.16685525844245486No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG1778300.1289184506813597No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG1460430.10587435917931629No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)