FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004999628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004999628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44151877
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT4115740.9321778097905101No Hit
CTCAACTCTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGCA971700.22008124365811219No Hit
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTG624000.14133034480051662No Hit
GTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTGTTCTCCGGCTGCCC618430.14006879028042227No Hit
GTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGA561300.12712936303931088No Hit
GTAGTGGTTGTGCAGAGCCTCATGCATCACGGAGCATGAGAAGACGTTCCC549080.12436164378696743No Hit
CTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTATAGAGGAAGAAGGA534250.12100278318858335No Hit
CCTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTATAGAGGAAGAAGG524690.11883752982913955No Hit
CTCTTGTCCACGGTGAGCTTGCTATAGAGGAAGAAGGAGCCGTCGGAGTCC455610.10319153588872337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)