FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004999765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004999765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52758867
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT7037751.333946386680366No Hit
CTCACACTCACGCACACTCGTACTGAGACTCAAGGCCGTCTCCACAACTCC1389300.2633301431586846No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA789940.14972649052527987No Hit
CAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCA707910.13417839317891342No Hit
CTCGTCCAACCAGCTGCCACGTCCTGTAACCAAAAGTGACCGGGATGAATG607890.11522044247083622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)