FastQCFastQC Report
Wed 11 May 2022
EGAF00004999905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004999905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48372070
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG1002970.20734485830356236No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT818490.1692071478437867No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACG595710.12315164515390802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)