EGAF00004999920 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004999920
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26301372
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG	95896	0.36460455370921335	No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA	83574	0.31775528668238295	No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG	55643	0.21155930572747308	No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG	45068	0.1713522777442941	No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAAC	44039	0.167439934312172	No Hit
ATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA	42039	0.15983576826334384	No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGT	39214	0.14909488371937402	No Hit
GATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA	30721	0.11680379259302517	No Hit
TCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA	29022	0.11034405353454566	No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG	28602	0.10874717866429173	No Hit
GGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAG	27340	0.10394894988748114	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCACTC	20465	16.520407	8
AGCTTAG	16580	16.27875	45
GGTCACT	21025	15.929437	7
GGGAGGT	22170	15.684247	3
ACTCTCC	21900	15.34467	11
AGGGATC	15535	15.30181	2
AGGTCAC	22830	15.04218	6
ATAGGGG	18075	14.980577	38
GGCATAG	18240	14.732251	35
GGAGGTC	23350	14.731343	4
TCACTCT	24075	14.250681	9
GAGGTCA	24495	14.228065	5
GAGCTTA	19175	14.158791	44
TGGGAGG	20390	14.080285	2
CAGGGAT	18225	13.892668	1
TGGCATA	19450	13.873094	34
CACTCTC	25090	13.506735	10
CATAGGG	20690	13.12886	37
GCATAGG	21465	12.654695	36
TCTCCCC	26995	12.626525	13