EGAF00005000275 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005000275
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	114545751
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	18935	0.0	8.989244	45-49
GAGCGTC	62385	0.0	8.472304	9
GCGTCGG	9160	0.0	8.388041	145
AGAGCGT	69795	0.0	7.737648	8
GATCGGA	74590	0.0	7.306752	1
ATCGGAA	79235	0.0	7.1434736	2
GCCGTAT	24645	0.0	7.1359596	45-49
GTCGCCG	25225	0.0	7.0924706	40-44
TCGGAAG	82415	0.0	6.949474	3
AAGAGCG	84980	0.0	6.722328	7
CGGAAGA	86020	0.0	6.7087016	4
AGCGTCG	51495	0.0	6.603315	9
CCGTATC	27585	0.0	6.512064	45-49
TGGTCGC	28010	0.0	6.423507	40-44
CGTATCA	28790	0.0	6.269719	45-49
GGTCGCC	30110	0.0	6.0910664	40-44
GTGGTCG	30565	0.0	6.0098796	40-44
AGATCGG	77570	0.0	5.3917794	145