EGAF00005000408 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005000408
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15155122
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	2140	0.0	7.7175837	45-49
CGTACGA	1945	0.0	7.576872	30-34
GATCGGA	9410	0.0	7.2914486	1
TCGGAAG	9865	0.0	7.1959925	3
CCGTACG	2025	0.0	7.0613747	30-34
ATCGGAA	9860	0.0	6.9847283	2
CTCGTAT	2610	0.0	6.549856	40-44
CGGAAGA	10440	0.0	6.4527397	4
TCTCGTA	2635	0.0	6.267791	40-44
TACGATC	2385	0.0	6.1680036	35-39
ACACGTC	6920	0.0	5.8628416	145
CGTATGC	2760	0.0	5.8264523	40-44
AGATCGG	9790	0.0	5.624152	145
ATGCCGT	3145	0.0	5.435652	45-49
ACCGTAC	2760	0.0	5.392365	30-34
TCGTATG	3115	0.0	5.3019676	40-44
TGCCGTC	3180	0.0	5.2847095	45-49
GCCGTCT	3320	0.0	5.018224	45-49