EGAF00005000549 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005000549
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	111406291
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGTC	50225	0.0	8.155165	9
CGCCGTA	11970	0.0	7.9550343	45-49
AGAGCGT	58115	0.0	7.0852723	8
GATCGGA	60070	0.0	6.7551036	1
ATCGGAA	63850	0.0	6.449682	2
TCGGAAG	65990	0.0	6.218129	3
CGTCGTG	36505	0.0	6.0154505	145
AAGAGCG	70245	0.0	5.9733186	7
CGGAAGA	70780	0.0	5.9280963	4
AGATCGG	63805	0.0	5.8042226	145
TCGCCGT	15020	0.0	5.702803	45-49
GTCGCCG	17425	0.0	5.6563206	40-44
GCCGTAT	17820	0.0	5.5061975	45-49
GTCGTGT	41095	0.0	5.167215	145
AGCGTCG	38975	0.0	5.135826	140-144
GCGTCGT	36665	0.0	5.1115146	140-144