EGAF00005000552 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005000552
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14297017
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	7555	0.0	9.055388	1
ATCGGAA	8110	0.0	8.9479685	2
TCGGAAG	8380	0.0	8.650613	3
CGGAAGA	8845	0.0	8.523665	4
TATGCCG	2235	0.0	7.784761	45-49
CGTTTCG	2410	0.0	7.339684	30-34
CTCGTAT	2705	0.0	6.753804	40-44
TCTCGTA	2700	0.0	6.497807	40-44
TAGATCG	2985	1.1259544E-9	6.315018	145
TTCGATC	2560	0.0	6.173417	35-39
CGTATGC	2810	0.0	6.1402473	40-44
ATGCCGT	3115	0.0	6.0044494	45-49
TGCCGTC	3140	0.0	5.8642926	45-49
TCGTATG	3315	0.0	5.685976	40-44
GCCGTCT	3190	0.0	5.63602	45-49
GTTTCGA	3625	0.0	5.4395814	30-34
AGATCGG	7665	0.0	5.334757	140-144