EGAF00005000553 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005000553
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14297017
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGTC	7325	0.0	10.293488	9
AGAGCGT	7975	0.0	8.818375	8
GATCGGA	8470	0.0	7.928055	1
ATCGGAA	9030	0.0	7.7885623	2
CGCCGTA	2180	0.0	7.780565	45-49
TCGGAAG	9285	0.0	7.574422	3
AAGAGCG	9525	0.0	7.4595065	7
CGGAAGA	9770	0.0	7.2726493	4
TAGATCG	3410	1.4551915E-11	6.3793306	145
GCCGTAT	2890	0.0	6.1700554	45-49
CGTCGCC	1515	0.005521726	5.7435036	145
CCGTATC	3295	0.0	5.719653	45-49
GTCGCCG	2910	0.0	5.6791058	40-44
CGTATCA	3315	0.0	5.597682	45-49
CTCGTCC	2880	8.536681E-7	5.53909	145
TCGCCGT	2590	0.0	5.4853973	45-49
TGGTCGC	3355	0.0	5.2715144	40-44
TCGCACC	3455	9.824289E-7	5.036994	145