Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005000686 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 34240824 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-76 |
%GC | 52 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 86440 | 0.25244719578010155 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTAAC | 5380 | 0.0 | 13.112738 | 1 |
TAACACG | 5910 | 0.0 | 11.226146 | 4 |
TCGCACG | 6385 | 0.0 | 10.501998 | 27 |
CGCGAGT | 6470 | 0.0 | 10.151379 | 13 |
TGCGCGA | 6525 | 0.0 | 9.958727 | 11 |
CGCACGA | 6845 | 0.0 | 9.745111 | 28 |
AACACGT | 7410 | 0.0 | 9.610146 | 5 |
ACGTGCG | 7280 | 0.0 | 9.545142 | 8 |
TAGGTCG | 1490 | 0.0 | 9.324854 | 3 |
CGCTCGC | 12035 | 0.0 | 9.118924 | 70 |
CGAGTCG | 7360 | 0.0 | 9.018267 | 15 |
GTTAGTT | 6685 | 0.0 | 8.889438 | 1 |
TATTCGG | 5500 | 0.0 | 8.150324 | 49 |
GCGAGTC | 8520 | 0.0 | 8.116621 | 14 |
CATATAG | 5635 | 0.0 | 8.016836 | 12 |
GGTAATC | 6345 | 0.0 | 7.9381843 | 37 |
GCGCAAT | 8480 | 0.0 | 7.8660517 | 46 |
CGACCTA | 2520 | 0.0 | 7.857043 | 4 |
GCACGAA | 8655 | 0.0 | 7.82722 | 29 |
TCGATTC | 3650 | 0.0 | 7.521837 | 50 |