EGAF00005000932 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005000932
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61818549
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	6810	0.0	9.793274	145
CGCCGTA	11180	0.0	8.06622	55-59
GCCGTAT	13190	0.0	7.08984	55-59
TCGCCGT	12910	0.0	7.0639224	55-59
CGTATCA	16340	0.0	5.971849	60-64
CGTCGTG	39970	0.0	5.767402	145
AGATCGG	69585	0.0	5.719314	145
GTCGCCG	15955	0.0	5.697604	55-59
AGCGTCG	44255	0.0	5.53658	145
TGGTCGC	17415	0.0	5.5029025	50-54
GATCGGA	65685	0.0	5.496046	145
GAGCGTC	51585	0.0	5.466551	145
TCGTGTA	39685	0.0	5.443486	145
CGTGTAG	40590	0.0	5.429274	145
GCGTCGT	40500	0.0	5.3983455	140-144
ATCGGAA	67060	0.0	5.3184953	145
GTGGTCG	18535	0.0	5.264248	50-54
TCGGAAG	67830	0.0	5.1298738	145
TAGATCG	23710	0.0	5.0447497	145