EGAF00005001059 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005001059
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63319572
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAC	5935	0.0	20.07763	1
GCGACCA	7910	0.0	17.59753	3
GGCGACC	9195	0.0	15.301586	2
CGACCAC	9230	0.0	14.766702	4
ACCGAGA	12715	0.0	10.833017	9
CCACCGA	14205	0.0	9.951892	7
CACCGAG	17260	0.0	8.526434	8
ACCACCG	17925	0.0	8.048337	6
ACGACGC	3800	0.0	6.944323	45-49
CGACGCT	4130	0.0	6.424557	45-49
TATGCCG	9750	0.0	6.156557	45-49
CACGACG	4750	0.0	5.6470323	45-49
TAGATCG	17610	0.0	5.3111873	145
AGATCGG	48460	0.0	5.2215962	145
GATCGGA	46190	0.0	5.195667	145
TCGGAAG	49210	0.0	5.156749	145
CGTATGC	12170	0.0	5.1467767	45-49
CGTCTGA	33640	0.0	5.086479	145
ATCGGAA	47380	0.0	5.0651717	145