FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005001179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005001179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51232619
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG96700.011.87537945-49
GATCGGA300500.010.4246031
CGTATGC112650.010.0266345-49
CTCGTAT115300.09.98471940-44
ATCGGAA328850.09.572262
TCGGAAG334450.09.4733153
TCTCGTA119800.09.42812440-44
ATGCCGT130650.09.00036645-49
CGGAAGA359100.08.7624444
GCCGTCT136850.08.31754850-54
TCCGATC42400.07.8658153
ATCTCGT144900.07.824976440-44
CGTCTTC175700.06.87454150-54
CCGTCTT178050.06.86524550-54
AGATCGG304950.05.634725145
AGAGCAC624400.05.49171548
CCGATCT59100.05.3977914
GTATGCC236800.05.382151645-49
GAGCACA669000.05.277319
GAAGAGC689150.05.25978666
Produced by FastQC (version 0.11.5)