FastQCFastQC Report
Tue 14 May 2024
EGAF00005001470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005001470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56583886
Total Bases8.4 Gbp
Sequences flagged as poor quality0
Sequence length149
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2091340.3695999246145802No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA725310.12818313680329413No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT660130.11666395623658651No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)