FastQCFastQC Report
Sat 11 May 2024
EGAF00005001546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005001546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19719610
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length149
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG558030.2829822699333303No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT357120.1810989162564574No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA241050.12223872581658562No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC217920.11050928491993504No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)