FastQCFastQC Report
Wed 1 May 2024
EGAF00005001574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005001574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22802875
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length149
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT424020.18595023653815582No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC267180.1171694358715732No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA248400.10893363227224638No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)