FastQCFastQC Report
Wed 1 May 2024
EGAF00005001580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005001580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24445513
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length149
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT388550.15894532464914932No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG363070.14852214392064506No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA290900.11899934356051353No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC269160.11010609595306917No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG254560.10413362975855733No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)