FastQCFastQC Report
Sun 5 May 2024
EGAF00005001590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005001590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31026829
Total Bases4.6 Gbp
Sequences flagged as poor quality0
Sequence length149
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG625110.20147402108027218No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT413250.13319118109040406No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA399240.12867573415252972No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT329060.10605660024103655No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG313570.10106414677439322No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)