FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392142889
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG1726150.023.4452179
GAGCGTC2010200.020.2615918
ATCGGAA2219200.018.8446161
AGAGCGT2319500.017.6342757
TCGGAAG2372050.017.5183092
CGGAAGA2585750.016.1093
AAGAGCG2798550.014.822646
TCCGATC308800.08.5874973
GAAGAGC5309350.08.2523885
CGCCGTA1051650.07.89866155-59
TCGCCGT1132300.07.34118455-59
GCCGTAT1216100.06.99615755-59
GTCGCCG1316600.06.70973155-59
CCGATCT430550.06.3441594
TGGTCGC1421400.06.317932650-54
CCGTATC1307950.06.192463455-59
CGTATCA1382450.06.176446460-64
GTGGTCG1546250.05.857462450-54
GGTCGCC1500800.05.705640350-54
TTCCGAT507050.05.65982152
Produced by FastQC (version 0.11.5)