FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418873015
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1418050.042.3589671
TCGGAAG1561300.038.4371452
CGGAAGA1777150.033.809463
AGAGCAC4283000.014.5171267
AGCACAC4633150.013.4747569
GAAGAGC4762250.013.1825085
GAGCACA4731550.013.1654048
TATGCCG1006850.012.61407545-49
CTCGTAT985200.011.47709240-44
CGTATGC1128800.011.20250545-49
TCTCGTA1037300.010.90203540-44
TATCTCG1078400.010.46771440-44
ATGCCGT1235950.010.37090345-49
CGCTCAT1264850.010.1038530-34
GCCGTCT1303550.09.7136350-54
TGCCGTC1264700.09.64105545-49
ACCGCTC1339300.09.57033430-34
TCGTATG1143400.09.4897140-44
ATCTCGT1254500.09.20518340-44
GTCACCG1418250.09.14915525-29
Produced by FastQC (version 0.11.5)