FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418873015
Sequences flagged as poor quality0
Sequence length151
%GC41

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG2068750.028.4661839
GAGCGTC2384050.024.8503078
ATCGGAA2591000.023.0282421
AGAGCGT2736100.021.6928847
TCGGAAG2751550.021.6660252
CGGAAGA2982150.020.0032983
AAGAGCG3270300.018.262426
GAAGAGC5932750.010.5273695
CGCCGTA1352650.08.80753255-59
TCGCCGT1445450.08.26113155-59
GCCGTAT1524850.07.97072255-59
GTCGCCG1671150.07.51755855-59
TGGTCGC1758350.07.243941350-54
CCGTATC1623000.07.197510255-59
CGTATCA1701450.07.1682260-64
GGAAGAG9477850.07.01899774
GTGGTCG1901100.06.76786950-54
GGTCGCC1871750.06.5549250-54
GCGTCGT1948050.06.333124610-14
CGTCGTG1995650.06.189331510-14
Produced by FastQC (version 0.11.5)