FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411073218
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1186700.022.3076131
TCGGAAG1315350.020.1686862
CGGAAGA1527350.017.4254283
TATGCCG785450.08.05435845-49
TCCGATC289250.07.9706083
CTCGTAT766600.07.18373740-44
AGAGCAC3972850.07.15909347
CGTATGC889250.07.119084445-49
TCTCGTA808450.06.849529740-44
AGCACAC4299150.06.69181449
GAAGAGC4363450.06.67099575
GAGCACA4387400.06.59343438
ATGCCGT1014500.06.377372345-49
GCCGTCT1038250.06.165853550-54
CCGATCT408500.05.9632764
ATCTCGT1011550.05.630518440-44
TGCCGTC1003500.05.60632945-49
GATCGGA822000.05.5130311
TCGTATG901200.05.319195340-44
TTCCGAT491800.05.30726242
Produced by FastQC (version 0.11.5)