FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433256335
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG1869650.018.7178869
GAGCGTC2186300.016.0968598
ATCGGAA2392300.014.7450441
TCGGAAG2536450.013.9414532
AGAGCGT2589850.013.6755137
CGGAAGA2805100.012.6528133
AAGAGCG3043050.011.6535956
TCCGATC335000.010.3891313
CGCCGTA1084700.08.202723555-59
TCGCCGT1158100.07.654024655-59
CCGATCT470550.07.4886774
GTCGCCG1291850.07.08505455-59
GCCGTAT1313350.06.97790655-59
TTCCGAT560900.06.81250332
GAAGAGC5810100.06.6327775
TGGTCGC1453800.06.40995550-54
CGTATCA1504450.06.189468460-64
GTGGTCG1634000.05.79896550-54
GTACGTC1649750.05.6338930-34
TACGTCC1685900.05.606819630-34
Produced by FastQC (version 0.11.5)