FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447206911
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1567500.053.628511
TCGGAAG1714850.049.0158922
CGGAAGA1933050.043.4050643
AGAGCAC4544000.018.9258697
AGCACAC4926650.017.5322069
GAAGAGC5042700.017.1620065
GAGCACA5048450.017.1108348
TATGCCG1179550.015.60249545-49
CGTATGC1299700.014.07981645-49
CTCGTAT1115800.013.80167840-44
TCTCGTA1149950.013.36785640-44
ATGCCGT1434300.012.85555345-49
GCCGTCT1466150.012.35082450-54
TGCCGTC1418150.011.84263545-49
AAGAGCA7601800.011.6906396
ATCTCGT1359400.011.39458740-44
ACTCCGG1660250.011.1330630-34
ACACGTC1712700.010.99534210-14
CGTCTGA1712450.010.96729115-19
CGTCTTC1717700.010.82400850-54
Produced by FastQC (version 0.11.5)