EGAF00005002364 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005002364
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	400576211
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	175800	0.0	15.968187	9
GAGCGTC	205650	0.0	13.834068	8
TCCGATC	33360	0.0	13.062645	3
ATCGGAA	227810	0.0	12.699274	1
TCGGAAG	240525	0.0	12.058165	2
AGAGCGT	243925	0.0	11.716895	7
CGGAAGA	262915	0.0	11.036832	3
AAGAGCG	286650	0.0	10.140364	6
CCGATCT	45370	0.0	9.332933	4
TTCCGAT	53235	0.0	8.607981	2
CTTCCGA	65415	0.0	7.082756	1
CGCCGTA	99470	0.0	6.8665476	55-59
TCGCCGT	107435	0.0	6.3250685	55-59
GTCGCCG	118930	0.0	5.913782	55-59
GCCGTAT	119925	0.0	5.8816524	55-59
GAAGAGC	539930	0.0	5.8603415	5
TGGTCGC	135130	0.0	5.292893	50-54
CGTATCA	137360	0.0	5.260332	60-64
ATGAGCG	55270	0.0	5.0113573	2