FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423076019
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1205200.028.4811531
TCGGAAG1333950.025.8461042
CGGAAGA1540100.022.4245723
TATGCCG818500.09.94056745-49
AGAGCAC4046050.09.1323977
CGTATGC945200.08.59273845-49
CTCGTAT822400.08.48133940-44
AGCACAC4404050.08.4409529
GAGCACA4489400.08.2934818
GAAGAGC4487700.08.2514155
GATCGGA776400.08.160611
TCTCGTA871650.08.05535240-44
ATGCCGT1058300.07.853899545-49
CGCTCAT1045600.07.800929530-34
TATCTCG912550.07.694315440-44
GCCGTCT1086700.07.497885750-54
ACCGCTC1122000.07.369240330-34
GTCACCG1209250.07.01257825-29
TGCCGTC1041750.06.798502445-49
ATCTCGT1083600.06.68846340-44
Produced by FastQC (version 0.11.5)