FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392629179
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG1673700.024.7860289
GAGCGTC1959250.021.2877628
ATCGGAA2163800.019.5914781
AGAGCGT2255800.018.6590257
TCGGAAG2303750.018.3552512
GATCGGA1725100.017.1479851
CGGAAGA2526100.016.7533763
AAGAGCG2722850.015.6046586
CGCCGTA1152750.012.18085955-59
TCGCCGT1215050.011.57418955-59
GCCGTAT1339850.010.63669755-59
GTCGCCG1359000.010.48254855-59
TGGTCGC1488800.09.71356450-54
CGTATCA1506300.09.51826460-64
GTGGTCG1608750.09.08567950-54
GCGTCGT1601250.08.84816710-14
CGTCGTG1638050.08.66973110-14
GAAGAGC5218500.08.6071235
TCCGATC306600.08.176543
TCGTGTA1822800.07.95635410-14
Produced by FastQC (version 0.11.5)