FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377298273
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1199850.028.8092441
TCGGAAG1326400.026.1247022
CGGAAGA1513600.022.8744243
AGAGCAC3748050.09.8422557
TATGCCG792000.09.19606745-49
AGCACAC4060750.09.1590769
GAAGAGC4151600.08.9920735
GAGCACA4168250.08.9525198
CTCGTAT788350.08.19396440-44
CGTATGC911900.08.04894645-49
TCTCGTA823450.07.86230140-44
TCGTATC943650.07.816569335-39
ATGCCGT993350.07.44881845-49
TATCTCG874250.07.41705740-44
TGCCGTC994950.07.205120645-49
GCCGTCT1036850.07.060811550-54
GTCACGA1095950.06.77791925-29
TCGTATG932850.06.741289640-44
ATCTCGT1015700.06.606833540-44
ATTCGTA1140950.06.57925935-39
Produced by FastQC (version 0.11.5)