FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430956673
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG1699250.020.038559
GAGCGTC2010150.017.0768138
ATCGGAA2212300.015.8784981
TCGGAAG2363750.014.8270582
AGAGCGT2385700.014.49436957
CGGAAGA2643400.013.2704373
CGCATTA417650.012.2409852
AAGAGCG2942100.011.9945736
GCGCATT475150.011.8561671
TCCGATC350700.07.751543
CGCCGTA1014200.07.47492955-59
TCGCCGT1091550.06.91069655-59
GAAGAGC5669550.06.74232775
GCCGTAT1207100.06.45699255-59
GTCGCCG1281050.06.19971555-59
TGGTCGC1404950.05.77036550-54
CGTATCA1388750.05.68140960-64
CCGATCT480700.05.5042344
CCGTATC1314700.05.325196755-59
GTGGTCG1538100.05.31231750-54
Produced by FastQC (version 0.11.5)