FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404601587
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG2289450.028.4757679
GAGCGTC2606850.025.1143078
ATCGGAA3001750.022.4100151
AGAGCGT3006550.021.8720117
TCGGAAG3143100.021.4303932
CGGAAGA3389300.019.9891073
AAGAGCG3582600.018.7335286
GAAGAGC6200050.011.1779065
CGCCGTA1197050.09.81105555-59
TCGCCGT1276950.09.21533155-59
GTCGCCG1480700.09.00944655-59
GCCGTAT1440100.08.35350755-59
TGGTCGC1650100.08.16973850-54
GGTCGCC1654900.07.85085750-54
CCGTATC1494150.07.665202655-59
CGTATCA1617000.07.644963760-64
GTGGTCG1869250.07.481786350-54
GGAAGAG9836500.07.44491624
TCTCGGT2243200.06.509835745-49
GCGTCGT2098400.06.25029710-14
Produced by FastQC (version 0.11.5)