FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414298207
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG2531750.026.9883179
GAGCGTC2830100.024.2272838
ATCGGAA3119500.023.1392331
TCGGAAG3280250.021.913362
AGAGCGT3189500.021.6448217
CGGAAGA3494500.020.4441033
AAGAGCG3792700.018.7202016
GAAGAGC6434700.011.4710175
CGCCGTA1588500.08.89465855-59
TCGCCGT1668600.08.44508855-59
GCCGTAT1745700.08.16842955-59
GGAAGAG9940750.07.82159954
GTCGCCG1919150.07.60692655-59
CCGTATC1837550.07.521890655-59
CGTATCA1918850.07.43513160-64
TGGTCGC1996150.07.346801350-54
TCCGATC325050.07.3143563
GTGGTCG2145400.06.9140850-54
GGTCGCC2123600.06.827376450-54
GCGTCGT2357300.05.96059210-14
Produced by FastQC (version 0.11.5)