FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428384766
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1361850.028.6352441
TCGGAAG1488950.026.1322482
CGGAAGA1725350.022.6352983
AGAGCAC4194750.09.8280797
AGCACAC4590150.09.1330659
GAGCACA4652600.08.9886668
GAAGAGC4668200.08.9679465
TATGCCG924900.08.83235845-49
CTCGTAT894950.07.936496740-44
TCTCGTA921500.07.70153440-44
CGTATGC1066700.07.69906545-49
TATCTCG982500.07.22632740-44
ATGCCGT1156300.07.215452745-49
TGCCGTC1157950.07.005863745-49
GCCGTCT1185500.06.908122550-54
TCGTATG1072500.06.580686640-44
ATCTCGT1132550.06.45597640-44
AAGAGCA7070350.06.2255466
CGTCTTC1441400.05.980402550-54
CCGTCTT1484950.05.83234850-54
Produced by FastQC (version 0.11.5)