FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417105245
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG1675200.019.751059
GAGCGTC1976650.016.9296198
ATCGGAA2199200.015.5196841
TCGGAAG2344750.014.5284772
AGAGCGT2347250.014.4079947
CGGAAGA2590300.013.1764253
AAGAGCG2818650.012.2324066
CGCCGTA982950.08.41419155-59
TCGCCGT1056850.07.869765355-59
TCCGATC316600.07.76247073
GTCGCCG1164000.07.30239655-59
GAAGAGC5515100.06.7249395
ATAGCCG383650.06.50031472
GCCGTAT1224500.06.49249355-59
TGGTCGC1320350.06.159389550-54
CGTATCA1413800.06.09682360-64
GTGGTCG1465700.06.00461150-54
CCGATCT444850.05.7853014
GCGTCGT1590600.05.30704210-14
CCGTATC1308450.05.26972955-59
Produced by FastQC (version 0.11.5)