EGAF00005002629 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005002629
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	361887135
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	87250	0.0	21.129942	1
TCGGAAG	98770	0.0	18.562462	2
CGGAAGA	114650	0.0	16.048471	3
TATGCCG	56770	0.0	7.7053485	45-49
CTCGTAT	60125	0.0	6.482015	40-44
CGTATGC	68600	0.0	6.4399753	45-49
TCTCGTA	62730	0.0	6.2613735	40-44
AGAGCAC	331290	0.0	6.131852	7
ATGCCGT	77805	0.0	5.829014	45-49
AGCACAC	360670	0.0	5.726773	9
GAAGAGC	369205	0.0	5.6690454	5
GAGCACA	371110	0.0	5.6047764	8
GTCACGA	80380	0.0	5.593204	25-29
GCCGTCT	80065	0.0	5.56669	50-54
GATCGGA	58845	0.0	5.309884	1
TCCGATC	23860	0.0	5.2260566	3
ACGAGAT	91470	0.0	5.1119537	30-34
TGCCGTC	76925	0.0	5.107845	45-49
ATCTCGT	80565	0.0	5.040836	40-44