EGAF00005002637 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005002637
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	446288901
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	112640	0.0	20.383926	1
TCGGAAG	124215	0.0	18.427315	2
CGGAAGA	148795	0.0	15.443022	3
GAAGACG	96195	0.0	8.869043	6
AGACGGC	65610	0.0	7.6673	8
GACGGCA	59495	0.0	7.61472	9
AAGACGG	101215	0.0	7.605582	7
TATGCCG	74880	0.0	7.2497134	45-49
CTCGTAT	74800	0.0	6.34216	40-44
CGTATGC	88175	0.0	6.197714	45-49
AGAGCAC	413235	0.0	6.1534023	7
TCTCGTA	78260	0.0	6.108078	40-44
AGCACAC	448725	0.0	5.681284	9
ATGCCGT	98600	0.0	5.6659527	45-49
GAGCACA	460115	0.0	5.572136	8
GAAGAGC	458130	0.0	5.5662146	5
GCCGTCT	100795	0.0	5.438984	50-54
GATCGGA	76450	0.0	5.2032204	1
ATCTCGT	99570	0.0	5.007595	40-44