FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454908558
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1325900.024.828031
TCGGAAG1470750.022.4000322
CGGAAGA1724600.019.1360863
GATCGGA900100.09.68232251
TATGCCG921600.09.1483645-49
CTCGTAT888100.08.388226540-44
TCTCGTA930800.08.07974840-44
AGAGCAC4398400.08.0657517
CGTATGC1059600.08.00068445-49
AGCACAC4807050.07.4751689
GAAGAGC4838850.07.44389535
GAGCACA4882000.07.28319458
ATGCCGT1175150.07.283086345-49
GCCGTCT1191600.07.136520450-54
ATCTCGT1142350.06.74085540-44
CGTCTTC1459150.06.004842350-54
CGTCTGA1451700.05.997156615-19
ACACGTC1480050.05.965599510-14
TGCCGTC1168350.05.941787745-49
CCGTCTT1512000.05.87646250-54
Produced by FastQC (version 0.11.5)