EGAF00005002642 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005002642
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	454908558
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	234330	0.0	13.92787	9
GAGCGTC	273920	0.0	11.988851	8
ATCGGAA	288055	0.0	11.722893	1
AGAGCGT	298825	0.0	11.108696	7
TCGGAAG	304930	0.0	11.097056	2
CGGAAGA	330215	0.0	10.181599	3
AAGAGCG	355040	0.0	9.488502	6
TCCGATC	33570	0.0	7.465044	3
CGCCGTA	135445	0.0	6.1964245	55-59
TCGCCGT	145935	0.0	5.764911	55-59
GAAGAGC	650490	0.0	5.6308765	5
GCCGTAT	156135	0.0	5.512596	55-59
CCGATCT	47695	0.0	5.3300276	4
GTCGCCG	168125	0.0	5.056576	55-59
TTCCGAT	55885	0.0	5.043655	2
CGTATCA	173945	0.0	5.0382147	60-64