FastQCFastQC Report
Tue 19 Apr 2022
EGAF00005002706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005002706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391263068
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG2019900.020.0258549
GAGCGTC2328150.017.436728
ATCGGAA2478900.017.1227361
TCGGAAG2630500.016.0125832
AGAGCGT2660550.015.3335937
CGGAAGA2866750.014.5989893
AAGAGCG3133400.013.2598746
GAAGAGC5606850.07.869745
TCCGATC309350.07.6812863
CGCCGTA1190200.07.107455755-59
TCGCCGT1263550.06.69371655-59
GCCGTAT1350400.06.40597555-59
GTCGCCG1452250.05.957705555-59
CCGTATC1434550.05.81902555-59
CCGATCT424250.05.80533744
CGTATCA1501000.05.78180360-64
TGGTCGC1557000.05.68019850-54
TTCCGAT503500.05.3113012
GGAAGAG8846550.05.2995014
GTGGTCG1691700.05.297314650-54
Produced by FastQC (version 0.11.5)