FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005003447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005003447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1360770
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTCTAT8357.0843945E-48.6432581
GTCAAAT13603.7062637E-78.4907311
CGACAGA9352.3184334E-48.490731
CTTCAAT18501.0682925E-87.8022931
CCTCCCG9250.00195029937.8022931
CTCTATT8400.0071755377.73263031
TTGAGAT12450.00507482656.3505653
CCTCCTT19156.063452E-56.02997061
GTTTATT16850.0030685935.56810471
TATAAGA16900.00333571785.5289897
CGCTGAT17550.00496095375.3460161
GTTTTAT23251.7069622E-45.27703481
GTTCCAT17800.00585725165.2709311
Produced by FastQC (version 0.11.5)