FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005003460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005003460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504749
Sequences flagged as poor quality0
Sequence length100-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCGAA4201.8723044E-413.8895681
CTCAAAT3850.001532975513.2582241
CTCCCGT3350.00938780313.0603391
CTCAAAC4200.002947451512.1533721
CCCAGAT5450.001675623910.7038861
CATAAAC4850.00861486810.5245691
TCCAATA6050.0043381359.5439532
AAACAAG8508.1952225E-59.3404435
CTTCTGT7100.00142636199.2434091
Produced by FastQC (version 0.11.5)