FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005003488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005003488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429458
Sequences flagged as poor quality0
Sequence length100-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAACGG1400.001008882325.8470861
CACAAGT2400.001071003518.092961
CTCTAAA2050.0092114817.6516691
AGGAGCA4453.3892647E-412.9485614
CAACCGG4400.004574884711.4587415
TTCGGCC4800.00873831410.5038453
GGCTGCT4850.00910698310.445421
CCCGGAA6500.00765088958.9073041
GTTCCAG6600.0086703918.7723451
TGCTACG2050.0048770977.104719120-124
Produced by FastQC (version 0.11.5)