FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005003491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005003491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38909198
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCGAT156150.017.800911
TTGACTT203600.017.5382441
TGACAAC175100.017.3881841
AGCTTGA147000.017.0990051
ATCGAGT130750.017.0592081
TGACGGC117550.016.9241871
ACGAGCC120250.016.8935361
TTTATGC144500.016.8687671
GACCTGG142500.016.8387971
AGCTACC115050.016.7814068
GGGACCT94200.016.7552831
CCTTACG132600.016.6929681
GGGCATC152000.016.6747261
TGGCTGG137700.016.634021
GCGCGAT77400.016.6186491
CACCGAA107800.016.5929768
ACTGAAC99050.016.5609421
TGTTCCG141550.016.541971
CTGATAG108450.016.5273841
GACTAAC103550.016.4594441
Produced by FastQC (version 0.11.5)