FastQCFastQC Report
Sun 11 Sep 2022
EGAF00005003509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005003509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26872896
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGCG899534433.473668040839364No Hit
TACTCTTC683726125.44296305094918No Hit
GGACACGT633316023.567091540859607No Hit
ATGAGAAA436330716.23683208538447No Hit
GGCCACGT323510.12038523871785163TruSeq Adapter, Index 20 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)