FastQCFastQC Report
Mon 12 Sep 2022
EGAF00005003513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005003513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38909198
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT1047377826.918514228949153No Hit
TTCATCGG984906525.312947853615487No Hit
CGGGCTTA921478523.682793461844163No Hit
AAACAAAC894899222.999682491528095No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)