FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005003531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005003531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27010180
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGGCAA230300.018.3872811
TGAGCCG136700.018.3755931
CGGACGT130700.018.109331
TGATCCT94650.018.0872882
CCCATAC169250.018.0688291
GTCGACT121450.017.9582398
ATCCTCT129250.017.9185284
CCTATTA132400.017.7710291
CGCTATC111750.017.760591
GATCCTC96800.017.6959193
GTAACTG125850.017.6148831
ATAACGC115600.017.5931151
CATGACA130800.017.575411
CATGGCG113550.017.5319061
AGCCTAA130950.017.5094411
GGCTCGA95800.017.480471
GCCGACA110500.017.4747563
CTGATCC130600.017.387851
CCACTAC106050.017.3756921
CAGCCGA148600.017.3753031
Produced by FastQC (version 0.11.5)